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Stan models included in bbsBayes2

Source: R/data.R
bbs_models.Rd

These models are included in bbsBayes2. The model files themselves can be found in the folder identified by system.file("models", package = "bbsBayes2"). To create a custom Stan model, see copy_model_file() and the model_file argument of prepare_model(). See also the models article for more details.

Usage

bbs_models

Format

bbs_models

A data frame with 9 rows and 3 columns:

  • model - Model type

    • first_diff - First difference models

    • gam - General Additive Models (GAM)

    • gamye - General Additive Models (GAM) with Year Effect

    • slope - Slope models

  • variant - Variant of the model to run

    • nonhier - Non-hierarchical models (only available for first difference models)

    • hier - Hierarchical models

    • spatial - Spatial models

  • file - Stan model file name

Examples

bbs_models
#> # A tibble: 9 × 3
#>   model      variant file                          
#>   <chr>      <chr>   <chr>                         
#> 1 first_diff nonhier first_diff_nonhier_bbs_CV.stan
#> 2 first_diff hier    first_diff_hier_bbs_CV.stan   
#> 3 first_diff spatial first_diff_spatial_bbs_CV.stan
#> 4 gam        hier    gam_hier_bbs_CV.stan          
#> 5 gam        spatial gam_spatial_bbs_CV.stan       
#> 6 gamye      hier    gamye_hier_bbs_CV.stan        
#> 7 gamye      spatial gamye_spatial_bbs_CV.stan     
#> 8 slope      hier    slope_hier_bbs_CV.stan        
#> 9 slope      spatial slope_spatial_bbs_CV.stan